[Trillian-users] compiling MPI software

[Kai Germaschewski]

Hi Matt,

on the Cray, the MPI compilers go by "ftn", "cc" and "CC", respectively,
rather than by their standard names mpif77/90, mpicc, mpicxx -- for
whatever reason, Cray decided to do things their own way. So you'll have to
teach your program about that (./configure probably has some way to tell it
the compilers you want to use).

--Kai



On Mon, Dec 2, 2013 at 3:02 PM, MacManes, Matthew
<Matthew.Macmanes at unh.edu>wrote:

>  Hello,
>
>  I am trying to install Ray (http://denovoassembler.sourceforge.net),
> which is a genome assembly program, on Trillian.
>
>  I am having problems at ‘make’, as it cannot find mpicxx.
>
>  make MAXKMERLENGTH=96
>   CXX code/application_core/ray_main.o
> make: mpicxx: Command not found
> make: *** [code/application_core/ray_main.o] Error 127
>
>  I am not sure if this is an issue with not having the correct module
> loaded.. Currently, I have:
>
>  Currently Loaded Modulefiles:
>   1) modules/3.2.6.7
>   2) nodestat/2.2-1.0402.39779.3.4.gem
>   3) sdb/1.0-1.0402.41597.10.13.gem
>   4) MySQL/5.0.64-1.0000.5053.22.1
>   5)
> lustre-cray_gem_s/1.8.6_2.6.32.59_0.7.1_1.0402.6998.7.1-1.0402.41312.15.19
>   6) udreg/2.3.2-1.0402.6376.3.1.gem
>   7) ugni/5.0-1.0402.6488.5.7.gem
>   8) gni-headers/2.1-1.0402.6487.6.4.gem
>   9) dmapp/4.0.1-1.0402.6266.5.11.gem
>  10) xpmem/0.1-2.0402.39965.2.5.gem
>  11) hss-llm/7.0.0
>  12) Base-opts/1.0.2-1.0402.38884.1.2.gem
>  13) craype-network-gemini
>  14) xt-asyncpe/5.19
>  15) cce/8.1.7
>  16) cray-libsci/12.0.01
>  17) pmi/4.0.1-1.0000.9421.73.3.gem
>  18) rca/1.0.0-2.0402.39780.3.94.gem
>  19) atp/1.6.2
>  20) PrgEnv-cray/4.2.15
>  21) pbs/11.3.1.122650
>  22) cray-mpich2/5.6.4
>  23) cray-hdf5-parallel/1.8.9
>
>  I’d appreciate it if somebody out there could pout me in the right
> direction.
>
>  Thanks, Matt
>
>   _____________________________________
>   *Matthew MacManes, Ph.D. *
> University of New Hampshire  I  Assistant Professor
> Department of Molecular, Cellular, & Biomedical Sciences
> Durham, NH  03824
> Phone: 603-862-4052  I  Twitter: @PeroMHC <https://twitter.com/PeroMHC>
> Web: genomebio.org
>  Office: 189 Rudman Hall
> Laboratory: 145 Rudman Hall
>
>
> _______________________________________________
> Trillian-users mailing list
> Trillian-users at lists.sr.unh.edu
> http://lists.sr.unh.edu/mailman/listinfo/trillian-users
>
>


-- 
Kai Germaschewski
Assistant Professor, Dept of Physics / Space Science Center
University of New Hampshire, Durham, NH 03824
office: Morse Hall 245E
phone:  +1-603-862-2912
fax: +1-603-862-2771
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