Hello,
I am trying to install Ray (http://denovoassembler.sourceforge.net), which is a genome assembly program, on Trillian.
I am having problems at ‘make’, as it cannot find mpicxx.
make MAXKMERLENGTH=96CXX code/application_core/ray_main.omake: mpicxx: Command not foundmake: *** [code/application_core/ray_main.o] Error 127
I am not sure if this is an issue with not having the correct module loaded.. Currently, I have:
Currently Loaded Modulefiles:1) modules/3.2.6.72) nodestat/2.2-1.0402.39779.3.4.gem3) sdb/1.0-1.0402.41597.10.13.gem4) MySQL/5.0.64-1.0000.5053.22.15) lustre-cray_gem_s/1.8.6_2.6.32.59_0.7.1_1.0402.6998.7.1-1.0402.41312.15.196) udreg/2.3.2-1.0402.6376.3.1.gem7) ugni/5.0-1.0402.6488.5.7.gem8) gni-headers/2.1-1.0402.6487.6.4.gem9) dmapp/4.0.1-1.0402.6266.5.11.gem10) xpmem/0.1-2.0402.39965.2.5.gem11) hss-llm/7.0.012) Base-opts/1.0.2-1.0402.38884.1.2.gem13) craype-network-gemini14) xt-asyncpe/5.1915) cce/8.1.716) cray-libsci/12.0.0117) pmi/4.0.1-1.0000.9421.73.3.gem18) rca/1.0.0-2.0402.39780.3.94.gem19) atp/1.6.220) PrgEnv-cray/4.2.1521) pbs/11.3.1.12265022) cray-mpich2/5.6.423) cray-hdf5-parallel/1.8.9
I’d appreciate it if somebody out there could pout me in the right direction.
Thanks, Matt
_____________________________________Matthew MacManes, Ph.D.
University of New Hampshire I Assistant Professor
Department of Molecular, Cellular, & Biomedical Sciences
Durham, NH 03824
Phone: 603-862-4052 I Twitter: @PeroMHCWeb: genomebio.orgOffice: 189 Rudman HallLaboratory: 145 Rudman Hall
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