[Trillian-users] compiling MPI software

[MacManes, Matthew]

Hello,

I am trying to install Ray (http://denovoassembler.sourceforge.net), which is a genome assembly program, on Trillian.

I am having problems at ‘make’, as it cannot find mpicxx.

make MAXKMERLENGTH=96
  CXX code/application_core/ray_main.o
make: mpicxx: Command not found
make: *** [code/application_core/ray_main.o] Error 127

I am not sure if this is an issue with not having the correct module loaded.. Currently, I have:

Currently Loaded Modulefiles:
  1) modules/3.2.6.7
  2) nodestat/2.2-1.0402.39779.3.4.gem
  3) sdb/1.0-1.0402.41597.10.13.gem
  4) MySQL/5.0.64-1.0000.5053.22.1
  5) lustre-cray_gem_s/1.8.6_2.6.32.59_0.7.1_1.0402.6998.7.1-1.0402.41312.15.19
  6) udreg/2.3.2-1.0402.6376.3.1.gem
  7) ugni/5.0-1.0402.6488.5.7.gem
  8) gni-headers/2.1-1.0402.6487.6.4.gem
  9) dmapp/4.0.1-1.0402.6266.5.11.gem
 10) xpmem/0.1-2.0402.39965.2.5.gem
 11) hss-llm/7.0.0
 12) Base-opts/1.0.2-1.0402.38884.1.2.gem
 13) craype-network-gemini
 14) xt-asyncpe/5.19
 15) cce/8.1.7
 16) cray-libsci/12.0.01
 17) pmi/4.0.1-1.0000.9421.73.3.gem
 18) rca/1.0.0-2.0402.39780.3.94.gem
 19) atp/1.6.2
 20) PrgEnv-cray/4.2.15
 21) pbs/11.3.1.122650
 22) cray-mpich2/5.6.4
 23) cray-hdf5-parallel/1.8.9

I’d appreciate it if somebody out there could pout me in the right direction.

Thanks, Matt

_____________________________________
Matthew MacManes, Ph.D.
University of New Hampshire  I  Assistant Professor
Department of Molecular, Cellular, & Biomedical Sciences
Durham, NH  03824
Phone: 603-862-4052  I  Twitter: @PeroMHC<https://twitter.com/PeroMHC>
Web: genomebio.org<http://genomebio.org/>
Office: 189 Rudman Hall
Laboratory: 145 Rudman Hall

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