[premise-users] using Picard tools (MarkDuplicates)

[Devon O'Rourke]

See #premise-help Slack channel for response.


On Thu, Nov 15, 2018 at 11:32 AM Bryan Barney <bryan.barney at gmail.com>
wrote:

> Hello,
>
> I cannot seem to find the syntax for using Picard tools on COLSA... I've
> tried:
>
> module load linuxbrew/colsa
> java -jar picard.jar MarkDuplicates REMOVE_DUPLICATES=true..... etc
>
> yet I get the error message:
>
> Unable to access jarfile picard.jar
>
> Anyone know the syntax to use the Picard tools?
>
> Thanks!
> -Bryan Barney
> _______________________________________________
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> premise-users at lists.sr.unh.edu
> https://lists.sr.unh.edu/mailman/listinfo/premise-users
>


-- 
Devon O'Rourke
Graduate student in Molecular and Evolutionary Systems Biology
University of New Hampshire
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