See #premise-help Slack channel for response.


On Thu, Nov 15, 2018 at 11:32 AM Bryan Barney <bryan.barney@gmail.com> wrote:
Hello,

I cannot seem to find the syntax for using Picard tools on COLSA... I've tried:

module load linuxbrew/colsa
java -jar picard.jar MarkDuplicates REMOVE_DUPLICATES=true..... etc

yet I get the error message:

Unable to access jarfile picard.jar

Anyone know the syntax to use the Picard tools?

Thanks!
-Bryan Barney
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--
Devon O'Rourke
Graduate student in Molecular and Evolutionary Systems Biology
University of New Hampshire