[Trillian-users] qsub question

Gorby, Matthew Matthew.Gorby at unh.edu
Sun Feb 1 00:20:46 EST 2015


Thank you everyone for the responses, I've cobbled together what I need.

Thanks!

-Matt

________________________________
From: kai.germaschewski at gmail.com [kai.germaschewski at gmail.com] on behalf of Kai Germaschewski [kai.germaschewski at unh.edu]
Sent: Saturday, January 31, 2015 9:39 PM
To: Raeder, Joachim
Cc: Gorby, Matthew; trillian-users at lists.sr.unh.edu
Subject: Re: [Trillian-users] qsub question

In simple cases, it should be possible to just do

aprun -n 1 ./job1 &
aprun -n 1 ./job2 &
aprun -n 1 ./job3 &
...
wait

I think Kris at some point helped Hyun-Ju with pretty much the same problem, not sure what their solution was, though.

--Kai




On Sat, Jan 31, 2015 at 6:49 PM, Jimmy Raeder <J.Raeder at unh.edu<mailto:J.Raeder at unh.edu>> wrote:
that should help:



On Jan 31, 2015, at 6:35 PM, "Gorby, Matthew" <Matthew.Gorby at unh.edu<mailto:Matthew.Gorby at unh.edu>> wrote:

Hello,

I'm having an issue figuring out how to submit this job properly, maybe someone can help.

I have a serial code which only needs one process to run, but I need to run it hundreds of times with slightly different inputs.  I would like to use one full node and have 32 serial processes running at the same time.  Is there a way to let PBS know that what I'm submitting should be run on one node with thirty two processes but each process be executed by its own command?

like a:

 #PBS -l serial

./executable input1 &
./executable input2 &
./executable input3 &
...
./executable inputN

type thing?

Thanks,

-Matt

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Joachim (Jimmy) Raeder
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University of New Hampshire
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Kai Germaschewski
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