[premise-users] Maker issue

[Tavares De Oliveira Melo, Arthur]

Hi Toni and Premisse Users,


I'm trying to run maker to scaffold annotation...
Since yesterday an error message is displayed and I cannot figure out whats is causing.


STATUS: Parsing control files...

STATUS: Processing and indexing input FASTA files...

BDB1557 library build did not include support for cryptography

(null)

: No such file or directory

BDB1557 library build did not include support for cryptography

(null)

: No such file or directory


------------- EXCEPTION: Bio::Root::Exception -------------

MSG: Could not open index file /mnt/lustre/hale/arthurmelo/Berberis/QTL.Reg.HiC.Annot/Maker/test_maker_data/dpp_contig.maker.output/mpi_blastdb/dpp_protein%2Efasta.mpi.1/dpp_protein%2Efasta.mpi.1.0.index: No such file or directory

STACK: Error::throw

STACK: Bio::Root::Root::throw /mnt/lustre/software/linuxbrew/colsa/Cellar/perl/5.24.1/lib/perl5/site_perl/5.24.1/Bio/Root/Root.pm:447

STACK: Bio::DB::IndexedBase::_open_index /mnt/lustre/software/linuxbrew/colsa/Cellar/perl/5.24.1/lib/perl5/site_perl/5.24.1/Bio/DB/IndexedBase.pm:712

STACK: Bio::DB::IndexedBase::_index_files /mnt/lustre/software/linuxbrew/colsa/Cellar/perl/5.24.1/lib/perl5/site_perl/5.24.1/Bio/DB/IndexedBase.pm:689

STACK: Bio::DB::IndexedBase::index_file /mnt/lustre/software/linuxbrew/colsa/Cellar/perl/5.24.1/lib/perl5/site_perl/5.24.1/Bio/DB/IndexedBase.pm:525

STACK: Bio::DB::IndexedBase::new /mnt/lustre/software/linuxbrew/colsa/Cellar/perl/5.24.1/lib/perl5/site_perl/5.24.1/Bio/DB/IndexedBase.pm:405

STACK: FastaDB::_safe_new /mnt/lustre/software/linuxbrew/colsa/Cellar/maker/2.31.9/libexec/bin/../lib/FastaDB.pm:204

STACK: FastaDB::new /mnt/lustre/software/linuxbrew/colsa/Cellar/maker/2.31.9/libexec/bin/../lib/FastaDB.pm:45

STACK: GI::build_fasta_index /mnt/lustre/software/linuxbrew/colsa/Cellar/maker/2.31.9/libexec/bin/../lib/GI.pm:1894

STACK: /mnt/lustre/software/linuxbrew/colsa/bin/maker:536

-----------------------------------------------------------

--> rank=NA, hostname=premise.sr.unh.edu

--> rank=NA, hostname=premise.sr.unh.edu?


I successfully ran maker couple of months ago and even trying to execute that same data, the same error is printed. Also, I can found this same error by trying to run the maker tutorial dataset...
I found this error can be related with "BioPerl: FAIL Installing Bio::Root::Version failed"...

Any ideia what's going on is much appreciated.

Thank you.



Arthur Melo
Bioinformatician Postdoctoral Researcher
University of New Hampshire | College of Life Sciences and Agriculture
http://www.unh.edu/halelab
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